2,069 search results for “computational biology” in the Public website
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Computer scientist Frank Takes Teacher of the Year
Students of the Science Faculty of Leiden University have chosen Frank Takes, researcher and teacher at the Leiden Institute of Advanced Computer Science, to be the Teacher of the Year. Impressively enough, Takes also became the runner up Discoverer of the Year.
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Interfacing the past
Computer applications and quantitative methods in archaeology CAA95.
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Life work award for computer scientist Grzegorz Rozenberg
Leiden prof. emeritus Grzegorz Rozenberg is honoured with the first life time award in formal languages, a research area of theoretical computer science. During a small ceremony at his house, he received a statue that was specially made for the occasion.
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Science
There are eight institutes at the Faculty of Mathematics and Natural Sciences:
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Six Computer Science master students excel and go to Oxford
Six master students of the Computer Science programme will present their papers on future cities at the NetMob conference in Oxford. The six papers were part of the international Future Cities Challenge and made it to the top 10 of all entries.
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More efficient drug development with the help of computer models
The coronavirus has the world in its grip. Finding a cure has never been more important. Unfortunately, the development of new drugs for treatment of the COVID-19 disease caused by the virus and development of a vaccine are complex, lengthy, and above all costly processes. With the help of computer…
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Structural and functional analysis of proteins involved in natural product biosynthesis and morphological differentiation in Streptomyces
Streptomyces present a valuable platform for natural product discovery. Lugdunomycin is a novel angucycline-derived polyketide from Streptomyces sp QL37, with unprecedented skeleton and antimicrobial activity.
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Computer models chart extensive Caribbean inter-island networks
The precolonial inhabitants of the Caribbean islands communicated, travelled, and exchanged objects and ideas along an expansive inter-island network. New methods of computer modeling shed light on these networks. Emma Slayton is set to discuss her work on this topic at her Defense on the 12th of Se…
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Horses and Computers - First Year LIACS Student Wins KHMW Prize
Winning an award at the start of your studies? No problem! Lieke Vertegaal is 20 years old and a first-year Computer Science student at Leiden University. On November 29, 2021, the Royal Dutch Academy of Sciences (KHMW) awarded her a Young Talent incentive award.
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College or university? Computer science students in the right place
The right student in the right place. That is what LIACS program director Frank Takes and education coordinator Joyce Glerum are aiming to do with the ‘Wisselstroom’ project. By next year, they hope to have a standardized protocol that will make it easier for computer science students to transfer from…
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Simulating the prehistoric use of fire through computer models
Archaeologists often use the percentages of heat-affected stone or bone artifacts found at archaeological sites as a way to determine how frequently fire was used by the inhabitants. Andrew Sorensen and Fulco Scherjon have come up with a computer model called 'fiReproxies' to simulate how fires used…
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Computer science students second-best in national hacking competition
On September 7, the Leiden Institute of Advanced Computer Science participated with a team of six students in the first edition of the Capture the Flag event 'Challenge the Cyber'. They were placed second in this national hacking competition for students.
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Erik van Kampen publishes in the Journal of Leukocyte Biology: The effects of poor eating habits persist even after diet
New research published in the Journal of Leukocyte Biology suggests that these changes to the behavior of the immune system are persistent and can continue even after diet is improvedAlmost everyone knows that improving your eating habits will most likely improve your health. What most people may not…
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Interactions of nutrients and pesticides and their effects on aquatic macrofauna
Can we distinguish the effects of pesticides from other abiotic and biotic factors that occur in the field? And how do these factors interact with pesticides?
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Towards an effective biodiversity conservation and governance in the Pontocaspian region
Freshwater and brackish water ecosystems are arguably the most vulnerable ecosystems on earth, due to concentrated human developments in and around them. The Pontocaspian (PC) region located at the border of Europe and Asia contains a variety of brackish water ecosystems and unique inhabitants, known…
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Aquatic eDNA: Beyond Species Presence
As a non-invasive genetic method, eDNA based approaches have become an important component of ecologists' and environmental managers' toolkits for biomonitoring in conservation and an increasingly important source of ecological knowledge.
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The quantum computer: it doesn't exist yet, but still we understand increasingly better what problems it can solve
How do we know what a quantum computer is good for when it hasn't been built yet? That's what PhD candidate Casper Gyurik investigated by combining two terms you often hear: quantum computing and machine learning.
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Article on Affective Computing by Andreas Häuselmann published in IDPL
Affective Computing (AC and sometimes called ‘Emotional AI’) provides opportunities to automatically process emotional data. However, is EU data protection law fit for purpose when it is applied to such AC approaches?
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Article on Affective Computing by Andreas Häuselmann published in IDPL
Affective Computing (AC and sometimes called ‘Emotional AI’) provides opportunities to automatically process emotional data. However, is EU data protection law fit for purpose when it is applied to such AC approaches?
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Granted STW Project: Energy Efficient Computer-Brain Interaction
The STW project Energy Efficient Computer-Brain Interaction (principal investigator for LIACS: dr. T.P. Stefanov) has been granted. Funding for LIACS: 1 PhD student + travel/equipment budget, project duration: 4 years.
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Peptide amphiphiles and their use in supramolecular chemistry
Promotor: J.G.E.M.Fraaije, Co-promotor: A. Kros
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'I have always worked for a better world. Here at Biology we do the same'
The new institute manager of the IBL studied biology for six months, but went in a completely different direction: development cooperation and the financial sector. Three decades later, Resi Janssen is making a radical career switch. Or isn’t she? 'In ten years’ time I want IBL to be in a new, sustainable…
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Using computer simulations to discover where Neanderthals lived
Archaeologist Fulco Scherjon has used computer simulations to identify where and how Neanderthals lived in West Europe. What stood out was that they probably had lots of children and lived in smaller groups than was previously thought. PhD defence on 28 May.
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Flat but not shallow. Towards flatter representations in deep semantic parsing for precise and feasible inferencing
Simulating human language understanding on the computer is a great challenge. A way to approach it is to represent natural language meanings in logic, and to use logical provers to determine what does and does not follow from a text. What logic is best to use and how natural language meanings are best…
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Tailoring x-ray tomography techniques for cultural heritage research
Visualizing the internal structure is a crucial step in acquiring knowledge about the origin, state, and composition of cultural heritage artifacts. Among the most powerful techniques for exposing the interior of cultural heritage objects is computed tomography (CT), a technique that computationally…
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On the optimization of imaging pipelines
In this thesis, topics relating to the optimization of high-throughput pipelines used for imaging are discussed. In particular, different levels of implementation, i.e., conceptual, software, and hardware, are discussed and the thesis outlines how advances on each level need to be made to make gains…
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Computational tools reveal secrets of 17th-century sealed letter
In a world first, an international team of researchers has read an unopened letter from Renaissance Europe – without breaking its seal or damaging it in any way. Nadine Akkerman, Reader in early modern English literature at Leiden University, is co-author of the article that appeared on 2 March in Nature…
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eLaw publishes article in Computer Law & Security Review
In healthcare, gender and sex considerations are crucial because they affect individuals' health and disease differences. Yet, most algorithms deployed in the healthcare context lack close consideration of these aspects and do not account for bias detection. In their latest paper, Eduard Fosch-Villaronga,…
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Exploring Images With Deep Learning for Classification, Retrieval and Synthesis
In 2018, the number of mobile phone users will reach about 4.9 billion. Assuming an average of 5 photos taken per day using the built-in cameras would result in about 9 trillion photos annually.
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Algorithm selection and configuration for Noisy Intermediate Scale Quantum methods for industrial applications
Quantum hardware comes with a different computing paradigm and new ways to tackle applications. Much effort has to be put into understanding how to leverage this technology to give real-world advantages in areas of interest for industries such as combinatorial optimization or machine learning.
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Quantum machine learning: on the design, trainability and noise-robustness of near-term algorithms
This thesis addresses questions on effectively using variational quantum circuits for machine learning tasks.
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Bioinformatics (MSc)
The master's specialisation Bioinformatics at Leiden University focuses on research, development and application of computational tools and approaches for expanding the use of biological, medical, behavioral and health data.
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This is what you want to know about the new directors of education Biology as a student
From 1 October onwards, Dennis Claessen and Marcel Schaaf will be the new directors of education of Biology. They will replace Han de Winde. Schaaf will be responsible for the bachelor, while Claessen will mainly focus on the master tracks of Biology. We gave students and the education office the change…
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Algebraic techniques for low communication secure protocols
Promotor: R. Cramer
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Strategies for Mechanical Metamaterial Design
On a structural level, the properties featured by a majority of mechanical metamaterials can be ascribed to the finite number of soft internal degrees-of freedom allowing for low-energy deformations.
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Training
As a PhD candidate, you are expected to follow certain courses and training programmes in the context of your training as a researcher. The courses and training programmes will help you conduct your research, write your dissertation, develop your career, and gain self-insight. The LACDR PhD training…
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Awards and Grants 2017
An overview of awards and prizes granted to our staff and students in 2017, as well as special appointments and royal distinctions.
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Chemical tools to study lipid signaling
Synthesis and application of chemical biology tools to study immunomodulatory signaling lipids.
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Computer program AlphaStar reaches professional level in video game StarCraft II
For the first time, a computer can compete with the very best human players in StarCraft II, a video game played by tens of thousands at a professional level and by millions just for fun. Mike Preuss, university lecturer at the Leiden Institute of Advanced Computer Science (LIACS) responds to the achievement…
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Thomas Bäck and Hao Wang new Editors in chief of the Evolutionary Computation Journal
LIACS scholars Thomas Bäck and Hao Wang will be the new Editors-in-Chief of the Evolutionary Computation Journal from November 1. Published by MIT Press since its foundation in 1993, the journal stands as a keystone in the field, providing a global platform for researchers exploring the workings of…
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Biology student Sander van Zon: ‘We can still learn so much more about lichens’
Lichens enthusiast Sander van Zon was eager to use his knowledge for his internship. He wrote an excellent thesis on lichens’ biodiversity in the city, of which his first scientific publication will appear soon. With it, he is nominated for the Leiden Science Young Talent Award 2022.
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Computer Science on place 51 in QS World Universities Ranking 2011
Computer Science on place 51 in QS World Universities Ranking 2011
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Functions of P38 and ERK kinases in zebrafish early development
Promotor: Prof.dr. H.P. Spaink Co-promotor: Dr. B.E. Snaar
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Metabolic signatures in nutrition and health: short-term diet response, sexual dimorphism and hormone chronobiology
The power of personalized nutrition lies in being able to conduct clinical research on healthy people while capturing metabolic markers sensitive to the impact of environmental and metabolic stressors (e.g. diet, changing sex hormones and the menstrual cycle).
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The tension between nature conservation and economic valuation of ecosystem services
Promotores: G.R. de Snoo, W.T. de Groot, Co-promotor: C.J.M. Musters
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Thiosugars: reactivity, methodology and applications
Carbohydrates, alongside proteins and nucleic acids, constitute a crucial and versatile family of biomolecules present in all life forms. They manifest as monosaccharides, oligosaccharides, and polysaccharides, covalently bonded to proteins and fats. Carbohydrates are integral to plant and arthropod…
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Systems diagnosis in chronic disease: prediction and evaluation
Promotor: J. van der Greef, T. Hankemeier; Co-promotor: H.A. van Wietmarschen
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From methanol to medicine – Sustainable microbial production of polyketide antibiotics
Can the pink-pigmented microbe Methylobacterium extorquens be genetically engineered to convert the sustainable raw material methanol into antibiotics?
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Chemical Tools to Illuminate N-acylphosphatidylethanolamine Biosynthesis
This thesis describes the development and optimization of the first molecular tools to study the enzyme PLA2G4E.